Oldest strain of Black Death bacteria found in 5,000-year-old human remains

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Oldest strain of Black Death bacteria found in 5,000-year-old human remains

Scientists have found the earliest strain of Yersinia pestis – the bacteria that caused the Black Death, a devastating bubonic plague pandemic in the 14th century.

Yersinia pestis was found in the 5,000-year-old remains of a male hunter-gatherer, dubbed RV 2039, in a region called Rinnukalns in present-day Latvia, making it the earliest known plague strain.

This image shows the skull bones of RV 2039, a man buried in Rinnukalns, Latvia, around 5,000 years ago

Analysis of ancient DNA in the hunter-gatherer’s skull suggests that the strain of Yersinia pestis, which causes the bubonic plague, was less transmissible and harmful than later versions, say Ben Krause-Kyora at Kiel University, Germany, and his colleagues.

The lack of the bacteria in three other people buried next to the man, dubbed RV 2039, is one hint of a less deadly disease, says Krause-Kyora.

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The apparent lower virulence leads the team to suggest that the plague wasn’t to blame for the decline of European people between 5000 and 6000 years ago, as claimed by a 2018 paper looking at Swedish farmers’ genomes.

“There’s an ongoing discussion as to whether Yersinia pestis played a big role in the Neolithic decline,” says Krause-Kyora. “Our hypothesis is really contradicting the one before.

Jawbone of RV 2039. The man was between 20 and 30 years old at time of death, the researchers estimate

It was maybe a more chronic, more omnipresent infection. It caused, for sure, some deaths, but it’s maybe not as severe as it became in the Middle Ages.”

Nonetheless, the high abundance of the bacteria found in the skull of the man, who was probably aged between 20 and 30 when he died, implies he succumbed to the plague, says Krause-Kyora.

The man may have been bitten by a rodent such as a beaver, which is known to carry Yersinia pestis.  Remains of the animals have been found at the same site by the river Salaca in Latvia.

The evidence points to the plague spreading from animal to human at the time, rather than human to human, says Krause-Kyora.

The bacteria hadn’t yet gained the genetic mutation that enables fleas to carry it, and which allowed it to infect and kill so many people centuries later.

“To have a close look at the early evolution of this deadly pathogen is really interesting,” says Krause-Kyora. “We see it was more chronic and harmless in the beginning before it became a more deadly disease.”

However, Simon Rasmussen at the University of Copenhagen, Denmark, says the evidence is weak for the claim the plague was milder 5000 years ago. “There are no new results to substantiate these claims and therefore it remains a hypothesis,” he says.

Rasmussen also believes the new study doesn’t invalidate the case he and his colleagues put forward in 2018, of the plague driving the Neolithic decline.

5,000-year-old hunter-gatherer is earliest person to die with the plague
3D illustration of Yersinia pestis – the bacteria behind the the Black Death in the 14th century

“The individual does in fact overlap with the Neolithic decline and very likely died from the plague infection. We know that large settlements, trade and movement happened in this period and human interaction is therefore still a very plausible cause of the spread of plague in Europe at this time,” he says.

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Mark Achtman at the University of Warwick, UK, says the team’s interpretations of the plague’s epidemiology appear speculative.

“The reasons for epidemic and pandemic outbreaks are unlikely to be found in the bacterial genomes, so ancient DNA of single genomes is not going to help,” he says.


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